Cell Imaging

Cell Ultrastructure Imaging using Cryo Soft X-ray Tomography

It is widely accepted that one of the main aims of imaging in biology is to achieve molecular localisation in the context of the overall structure of biological cells in their native state.

While this capability has been craved by biologists for many years, it is only very recently a practical possibility, thanks to the combination of two separate breakthroughs in cell imaging. The first of these is the current state of the art in cryo-soft x-ray tomography (cryo-SXT), which is the only imaging modality that can provide nanoscale 3D visualisation of the ultrastructure of cryo-preserved, unstained, whole cells thicker than 1 micrometre. The second of these breakthroughs is super-resolution cryo-fluorescence microscopy (cryo-SRFM), which enables the imaging of biological structures to similar levels of resolution as with cryo-SXT and an order of magnitude better than was previously thought possible using light as illumination.

The combination (or correlation) of the cryo-SXT and cryo-SRFM cell images adds functional information to structure, enabling studies of cellular events that cannot be captured using either light or soft x-ray microscopes alone (nor any other imaging modality).

A cell’s shape and the shape of its internal organelle are seen by Cell Biologists as important influencers of the DNA mutations in genes that can cause cancer.


Yeast cell at the main stages of cell division. [Prof. Carolyn Larabell, UCSF]”

Water-Window Imaging

Soft x-ray imaging is carried out at a wavelength in the so-called ‘water window’ region of the electromagnetic spectrum. This window extends from the K-absorption edge of carbon (4.4 nm wavelength) to the K-edge  of Oxygen (2.33 nm wavelength). In this wavelength window, water is transparent to soft x-rays but the carbon-based organic molecules are absorbing. This results in soft x-ray images with a high natural contrast.

“ from Journal of The Royal Society, 2015, publication ‘Three-dimensional imaging of human stem cells using soft X-ray tomography’, by J.C. Niclis”

Image Correlation Capability

Combining density-based organelle image analysis with gold nanoparticle labelling of specific surface proteins allows single visualization of the localization and abundance of specific proteins relative to the localization of individual organelle.

“from Journal of Cellular Biochemistry, 2014, ‘Putting molecules in their place’, by Bertrand P. Cinquin.”

Correlation of cryogenic fluorescence tomography (CFT) with soft x-ray tomography (SXT).

A: CFT image,  B: SXT image,  C = correlated image

The correlation of complementary imaging data, taken from the same specimen is a powerful technique, providing precise molecular localization (CFT) within a high-resolution 3D image of the whole cell structure (SXT).

This project has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreements No 738774, No 959776 & No 101017116